Metrikler
Yayın
72
Açık Erişim
14
BM Sürdürülebilir Kalkınma Amaçları
Duyurular & Dokümanlar
Dosya İndir
Eğitim Bilgileri
2008 - 2013
2008 - 2013Doktora
Universiteit Utrecht, Kimya Bölümü, Hollanda
2006 - 2008
2006 - 2008Yüksek Lisans
Boğaziçi Üniversitesi, Fen Bilimleri Enstitüsü, Kimya Mühendisliği (Yl) (Tezli), Türkiye
2001 - 2006
2001 - 2006Lisans
Boğaziçi Üniversitesi, Mühendislik Fakültesi, Kimya Mühendisliği Bölümü, Türkiye
Yaptığı Tezler
2013
2013Doktora
Dissecting biomolecular interactions by integrative modeling
Universiteit Utrecht, Kimya Bölümü
2008
2008Yüksek Lisans
Dynamic analysis of sumo conjugation cascade by molecular modeling and simulations
Boğaziçi Üniversitesi, Fen Bilimleri Enstitüsü, Kimya Mühendisliği (Yl) (Tezli)
Akademik Ünvanlar / Görevler
2017 - Devam Ediyor
2017 - Devam EdiyorYrd. Doç. Dr.
Dokuz Eylül Üniversitesi, İzmir Uluslararası Biyotıp ve Genom Enstitüsü, Biyotıp Ve Sağlık Teknolojileri Anabilim Dalı
2013 - 2016
2013 - 2016Araştırma Görevlisi
The European Molecular Biology Laboratory Heidelberg, Yapısal Ve Hesaplamalı Biyoloji
2008 - 2013
2008 - 2013Araştırma Görevlisi
Universiteit Utrecht, Kimya
Yönetilen Tezler
2024
2024Doktora
HER2'ye karşı insanlaştırılmış yeni bioaktif monoklonal antikor geliştirilmesi
KARACA EREK E. (Eş Danışman), ÖZTÜRK M. (Eş Danışman)
A.ERDOĞAN(Öğrenci)
2022
2022Doktora
Role of AXL in hepatocellular carcinoma
KARACA EREK E. (Eş Danışman), ÖZTÜRK M. (Eş Danışman)
T.BATUR(Öğrenci)
2022
2022Yüksek Lisans
Benchmarking the binding affinity predictors over the spike: ACE2 deep mutagenesis dataset
KARACA EREK E. (Danışman)
E.ŞAMİLOĞLU(Öğrenci)
2022
2022Yüksek Lisans
PROT-ON: Structure-based detection of critical mutations in redesigning protein-protein interfaces
KARACA EREK E. (Danışman)
M.KOŞACA(Öğrenci)
2022
2022Yüksek Lisans
Recombinant protein production in alcohol dehydrogenase 2 deficient strain of Pichia pastoris
KARACA EREK E. (Eş Danışman), EREK E.(Eş Danışman)
E.ÇITAK(Öğrenci)
2021
2021Yüksek Lisans
Identifying the Working Principles of Human DNA Methyltransferase 3A Enzyme by Computational Methods
KARACA EREK E. (Danışman)
B.SAVAŞ(Öğrenci)
2020
2020Yüksek Lisans
Molecular determinants of DNA methylation mechanismsin mammals
KARACA EREK E. (Danışman)
D.DOĞAN(Öğrenci)
2019
2019Yüksek Lisans
Molecular specificity of tam family receptors towards different ligands
KARACA EREK E. (Danışman)
T.KARAKULAK(Öğrenci)
Makaleler
Tümü (53)
SCI-E, SSCI, AHCI (51)
SCI-E, SSCI, AHCI, ESCI (51)
Scopus (49)
TRDizin (4)
2025
20251. So close yet so far apart: distinct flanking sequence recognition by DNMT3A and DNMT3B
Barlas A. B., KARACA EREK E.
Communications Biology
, cilt.8, sa.1, 2025 (SCI-Expanded, Scopus)
2025
20252. E2-regulated transcriptome complexity revealed by long-read direct RNA sequencing: from isoform discovery to truncated proteins
DÖKEN D. N., ÖZGÜL İ., Yilmazbilek I., Almeric E., Eroglu I. C., Cicek M., et al.
RNA biology
, cilt.22, sa.1, ss.1-21, 2025 (SCI-Expanded, Scopus)
2025
20253. An NADH-controlled gatekeeper of ATP synthase
Schildhauer F., Ryl P. S., Lauer S. M., Lenz S., Barlas A. B., Ouzounidis V. R., et al.
Molecular Cell
, cilt.85, sa.13, ss.2567, 2025 (SCI-Expanded, Scopus)
2025
20254. Towards a Greener AlphaFold2 Protocol for Antibody–Antigen Modeling: Insights From CAPRI Round 55
Savaş B., Yılmazbilek İ., Özsan A., KARACA EREK E.
Proteins: Structure, Function and Bioinformatics
, 2025 (SCI-Expanded, Scopus)
2024
20245. The HADDOCK2.4 web server for integrative modeling of biomolecular complexes
Honorato R. V., Trellet M. E., Jimenez-Garcia B., Schaarschmidt J. J., Giulini M., Reys V., et al.
NATURE PROTOCOLS
, cilt.19, sa.11, 2024 (SCI-Expanded, Scopus)
2024
20246. Benchmarking the accuracy of structure-based binding affinity predictors on Spike–ACE2 deep mutational interaction set
Ozden B., Şamiloğlu E., Özsan A., Erguven M., Yükrük C., Koşaca M., et al.
Proteins: Structure, Function and Bioinformatics
, cilt.92, sa.4, ss.529-539, 2024 (SCI-Expanded, Scopus)
2024
20247. Dynamic proximity interaction profiling suggests that YPEL2 is involved in cellular stress surveillance.
Turan G., Olgun Ç. E., Ayten H., Toker P., Ashyralyyev A., Savaş B., et al.
Protein science : a publication of the Protein Society
, cilt.33, 2024 (SCI-Expanded, Scopus)
2023
20238. An alternatively spliced PD-L1 isoform PD-L1∆3, and PD-L2 expression in breast cancers: implications for eligibility scoring and immunotherapy response
DÖKEN D. N., ÖZGÜL İ., Yilmazbilek I., Yakicier M. C., KARACA EREK E., ERSON BENSAN A. E.
Cancer Immunology, Immunotherapy
, cilt.72, sa.12, ss.4065-4075, 2023 (SCI-Expanded, Scopus)
2023
20239. The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15
Ozden B., Kryshtafovych A., KARACA EREK E.
Proteins: Structure, Function and Bioinformatics
, cilt.91, sa.12, ss.1636-1657, 2023 (SCI-Expanded, Scopus)
2023
202310. Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15
Kryshtafovych A., Montelione G. T., Rigden D. J., Mesdaghi S., Karaca Erek E., Moult J.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.91, sa.12, ss.1903-1911, 2023 (SCI-Expanded, Scopus)
2023
202311. Genetic complementation screening and molecular docking give new insight on phosphorylation-dependent Mastl kinase activation.
Erguven M., Kilic S., Karaca E., Diril M. K.
Journal of biomolecular structure & dynamics
, cilt.41, ss.1-13, 2023 (SCI-Expanded, Scopus)
2023
202312. Molecular Mechanism of Nucleosome Recognition by the Pioneer Transcription Factor Sox
Ozden B., Boopathi R., Barlas A. B., Lone I. N., Bednar J., Petosa C., et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING
, cilt.63, sa.12, ss.3839-3853, 2023 (SCI-Expanded, Scopus)
2023
202313. Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source
Gul M., Ayan E., Destan E., Johnson J. A., Shafiei A., Kepceoğlu A., et al.
Scientific reports
, cilt.13, sa.1, ss.8123, 2023 (SCI-Expanded, Scopus)
2023
202314. Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines
Özden-Yılmaz G., Savas B., Bursalı A., Eray A., Arıbaş A., ŞENTÜRK Ş., et al.
CELLS
, cilt.12, sa.6, 2023 (SCI-Expanded, Scopus)
2023
202315. Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”
Atalay N., Akcan E. K., Gül M., Ayan E., Destan E., Ertem F. B., et al.
Turkish Journal of Biology
, cilt.47, sa.1, 2023 (SCI-Expanded, Scopus, TRDizin)
2023
202316. PROT-ON: A structure-based detection of designer PROTein interface MutatiONs
Koşaca M., Yılmazbilek İ., Karaca E.
Frontiers in Molecular Biosciences
, cilt.10, 2023 (SCI-Expanded, Scopus)
2022
202217. Enzymatic Generation of Double-Modified AdoMet Analogues and Their Application in Cascade Reactions with Different Methyltransferases
Erguven M., Cornelissen N. V., Peters A., KARACA EREK E., Rentmeister A.
CHEMBIOCHEM
, cilt.23, 2022 (SCI-Expanded, Scopus)
2022
202218. Novel biallelic variants affecting the OTU domain of the gene OTUD6B associate with severe intellectual disability syndrome and molecular dynamics simulations
Cingöz S., Soydemir D., Öner T. Ö., Karaca E., Özden B., Kurul S. H., et al.
European Journal of Medical Genetics
, cilt.65, sa.6, 2022 (SCI-Expanded, Scopus)
2022
202219. A C-term truncated EIF2B gamma protein encoded by an intronically polyadenylated isoform introduces unfavorable EIF2B gamma-EIF2 gamma interactions
ÇIRÇIR HATIL A., KÖKSAL BIÇAKCI G., Savas B., DÖKEN D. N., Henden S. O., CAN T., et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.90, sa.3, ss.889-897, 2022 (SCI-Expanded, Scopus)
2022
202220. Modeling the Dynamics of Protein-Protein Interfaces, How and Why?
Karaca E., Prevost C., Sacquin-Mora S.
MOLECULES
, cilt.27, sa.6, 2022 (SCI-Expanded, Scopus)
2022
202221. VARS1 mutations associated with neurodevelopmental disorder are located on a short amino acid stretch of the anticodon-binding domain
Hız A. S., Kılıç S., Bademci G., Karakulak T., Erdogan A., Ozden B., et al.
Turkish Journal of Biology
, cilt.46, sa.6, ss.458-464, 2022 (SCI-Expanded, Scopus, TRDizin)
2021
202122. Assessment of the CASP14 assembly predictions
Ozden B., Kryshtafovych A., KARACA EREK E.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.89, sa.12, ss.1787-1799, 2021 (SCI-Expanded, Scopus)
2021
202123. Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl
Karakulak T., RİFAİOĞLU A. S., Rodrigues J. P. G. L. M., Karaca E.
FRONTIERS IN MOLECULAR BIOSCIENCES
, cilt.8, 2021 (SCI-Expanded, Scopus)
2021
202124. Türk Ulusal Bilim e-Altyapısı TRUBA'da Moleküler Dinamik Paketi GROMACS'in Performans Optimizasyonu
SAVAŞ B., KARACA EREK E.
International Journal of Advances in Engineering and Pure Sciences
, cilt.33, ss.609-613, 2021 (TRDizin)
2021
202125. Arayüz Mutasyonlarının Protein Etkileşimlerine Tesirini Tahmin Eden Algoritmalarla HADDOCK'un Performansının Karşılaştırılması
Koşaca M., Şamiloğlu E., KARACA EREK E.
International Journal of Advances in Engineering and Pure Sciences
, cilt.33, ss.592-608, 2021 (TRDizin)
2021
202126. How Far Are We from the Rapid Prediction of Drug Resistance Arising Due to Kinase Mutations?
Erguven M., Karakulak T., Diril M. K., KARACA EREK E.
ACS OMEGA
, cilt.6, sa.2, ss.1254-1265, 2021 (SCI-Expanded, Scopus)
2021
202127. Autosomal recessive variants in TUBGCP2 alter the γ-tubulin ring complex leading to neurodevelopmental disease
GÜNGÖR S., OKTAY Y., Hiz S., Aranguren-Ibanez A., Kalafatcilar I., Yaramis A., et al.
ISCIENCE
, cilt.24, sa.1, 2021 (SCI-Expanded, Scopus)
2020
202028. Effective PEGylation method to improve biocompatibility of graphene derivatives
Demirel E., KARACA EREK E., YÜKSEL DURMAZ Y.
EUROPEAN POLYMER JOURNAL
, cilt.124, 2020 (SCI-Expanded, Scopus)
2019
201929. More Favorable Palmitic Acid Over Palmitoleic Acid Modification of Wnt3 Ensures Its Localization and Activity in Plasma Membrane Domains
Azbazdar Y., Ozalp O., Sezgin E., Veerapathiran S., Duncan A. L., Sansom M. S. P., et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
, cilt.7, 2019 (SCI-Expanded, Scopus)
2019
201930. Novel mutations in KMT2B offer pathophysiological insights into childhood-onset progressive dystonia
Dafsari H. S., Sprute R., Wunderlich G., Daimagueler H., KARACA EREK E., Contreras A., et al.
JOURNAL OF HUMAN GENETICS
, cilt.64, sa.8, ss.803-813, 2019 (SCI-Expanded, Scopus)
2019
201931. In Silico Phylogenetic and Structural Analyses of Plant Endogenous Danger Signaling Molecules upon Stress.
Pavlopoulou A., KARACA EREK E., Balestrazzi A., Georgakilas A. G.
Oxidative medicine and cellular longevity
, cilt.2019, ss.8683054, 2019 (SCI-Expanded, Scopus)
2018
201832. Defining distance restraints in HADDOCK
Bonvin A. M. J. J., KARACA EREK E., Kastritis P. L., Rodrigues J. P. G. L. M.
NATURE PROTOCOLS
, cilt.13, sa.7, ss.1503, 2018 (SCI-Expanded)
2018
201833. Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance
Rubio-Cosials A., Schulz E. C., Lambertsen L., Smyshlyaev G., Rojas-Cordova C., Forslund K., et al.
CELL
, cilt.173, sa.1, ss.208-240, 2018 (SCI-Expanded, Scopus)
2018
201834. Peptide Derivatives of Erythropoietin in the Treatment of Neuroinflammation and Neurodegeneration
Ercan I., Tufekci K. U., Karaca E., GENÇ Ş., Genc K.
THERAPEUTIC PROTEINS AND PEPTIDES
, cilt.112, ss.309-357, 2018 (SCI-Expanded)
2017
201735. M3: an integrative framework for structure determination of molecular machines
KARACA EREK E., Rodrigues J. P. G. L. M., Graziadei A., Bonvin A. M. J. J., Carlomagno T.
NATURE METHODS
, cilt.14, sa.9, ss.897-905, 2017 (SCI-Expanded, Scopus)
2017
201736. Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1
Vangone A., Rodrigues J. P. G. L. M., Xue L. C., van Zundert G. C. P., Geng C., Kurkcuoglu Z., et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.85, sa.3, ss.417-423, 2017 (SCI-Expanded, Scopus)
2016
201637. Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending
Bebel A., KARACA EREK E., Kumar B., Stark W. M., Barabas O.
ELIFE
, cilt.5, 2016 (SCI-Expanded, Scopus)
2016
201638. Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment
Lensink M. F., Velankar S., Kryshtafovych A., Huang S., Schneidman-Duhovny D., Sali A., et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.84, ss.323-348, 2016 (SCI-Expanded, Scopus)
2016
201639. The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
van Zundert G. C. P., Rodrigues J. P. G. L. M., Trellet M., Schmitz C., Kastritis P. L., KARACA EREK E., et al.
JOURNAL OF MOLECULAR BIOLOGY
, cilt.428, sa.4, ss.720-725, 2016 (SCI-Expanded, Scopus)
2015
201540. Information-Driven Structural Modelling of Protein-Protein Interactions
Rodrigues J. P. G. L. M., KARACA EREK E., Bonvin A. M. J. J.
MOLECULAR MODELING OF PROTEINS: 2ND EDITION
, cilt.1215, ss.399-424, 2015 (SCI-Expanded, Scopus)
2014
201441. Blind prediction of interfacial water positions in CAPRI
Lensink M. F., Moal I. H., Bates P. A., Kastritis P. L., Melquiond A. S. J., KARACA EREK E., et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.82, sa.4, ss.620-632, 2014 (SCI-Expanded, Scopus)
2013
201342. Defining the limits of homology modeling in information-driven protein docking
Rodrigues J. P. G. L. M., Melquiond A. S. J., KARACA EREK E., Trellet M., van Dijk M., van Zundert G. C. P., et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.81, sa.12, ss.2119-2128, 2013 (SCI-Expanded, Scopus)
2013
201343. On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys
KARACA EREK E., Bonvin A. M. J. J.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY
, cilt.69, ss.683-694, 2013 (SCI-Expanded, Scopus)
2013
201344. Advances in integrative modeling of biomolecular complexes
KARACA EREK E., Bonvin A. M. J. J.
METHODS
, cilt.59, sa.3, ss.372-381, 2013 (SCI-Expanded, Scopus)
2012
201245. Next challenges in protein-protein docking: from proteome to interactome and beyond
Melquiond A. S. J., KARACA EREK E., Kastritis P. L., Bonvin A. M. J. J.
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE
, cilt.2, sa.4, ss.642-651, 2012 (SCI-Expanded, Scopus)
2012
201246. Clustering biomolecular complexes by residue contacts similarity
Rodrigues J. P. G. L. M., Trellet M., Schmitz C., Kastritis P., KARACA EREK E., Melquiond A. S. J., et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.80, sa.7, ss.1810-1817, 2012 (SCI-Expanded, Scopus)
2011
201147. A Multidomain Flexible Docking Approach to Deal with Large Conformational Changes in the Modeling of Biomolecular Complexes
KARACA EREK E., Bonvin A. M. J. J.
STRUCTURE
, cilt.19, sa.4, ss.555-565, 2011 (SCI-Expanded, Scopus)
2011
201148. Alternative Allosteric Mechanisms Can Regulate the Substrate and E2 in SUMO Conjugation
KARACA EREK E., Tozluoglu M., Nussinov R., HALİLOĞLU T.
JOURNAL OF MOLECULAR BIOLOGY
, cilt.406, sa.4, ss.620-630, 2011 (SCI-Expanded, Scopus)
2010
201049. Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions
de Vries S. J., Melquiond A. S. J., Kastritis P. L., KARACA EREK E., Bordogna A., van Dijk M., et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
, cilt.78, sa.15, ss.3242-3249, 2010 (SCI-Expanded, Scopus)
2010
201050. Understanding the Role of the Josephin Domain in the PolyUb Binding and Cleavage Properties of Ataxin-3
Nicastro G., Todi S. V., KARACA EREK E., Bonvin A. M. J. J., Paulson H. L., Pastore A.
PLOS ONE
, cilt.5, sa.8, 2010 (SCI-Expanded, Scopus)
2010
201051. Building Macromolecular Assemblies by Information-driven Docking
KARACA EREK E., Melquiond A. S. J., de Vries S. J., Kastritis P. L., Bonvin A. M. J. J.
MOLECULAR & CELLULAR PROTEOMICS
, cilt.9, sa.8, ss.1784-1794, 2010 (SCI-Expanded, Scopus)
2010
201052. A Mechanistic View of the Role of E3 in Sumoylation
Tozluoglu M., KARACA EREK E., Nussinov R., Halilogiu T.
PLOS COMPUTATIONAL BIOLOGY
, cilt.6, sa.8, 2010 (SCI-Expanded, Scopus)
2008
200853. Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis
Tozluoglu M., KARACA EREK E., HALİLOĞLU T., Nussinov R.
NUCLEIC ACIDS RESEARCH
, cilt.36, sa.15, ss.5033-5049, 2008 (SCI-Expanded, Scopus)
Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler
2024
20241. Investigation of the Effects of Mutations in the FYR Module of Kabuki Syndrome-Associated KMT2D Gene on Protein Interactions and Chromatin Organization
Özden Yılmaz G., Yılmazbilek İ., Ölmez Türker A., Ozkan Kucuk N. E., ÖZLÜ SICAKKAN N., KARAKÜLAH G., et al.
9th International Congress of the Molecular Biology Association of Turkey, İzmir, Türkiye, 12 - 14 Eylül 2024, (Özet Bildiri)
2023
20232. KDM6A shows distinct profiles in bladder
Özden Yılmaz G., Savaş B., Bursalı A., Eray A., Arıbaş A., Şentürk Ş., et al.
1st Epigenetics Society International Meeting “Epigenetics of Disease and Development”, Rome, İtalya, 12 - 14 Ekim 2023, ss.209-210, (Özet Bildiri)
2019
20193. Integrative modelling with HADDOCK - https://meetings.embo.org/event/19-integrative-structural-biology
Bonvin A. M., KARACA EREK E.
Practical integrative structural biology, Hamburg, Almanya, 3 - 09 Ekim 2019, (Tam Metin Bildiri)
2019
20194. TAM FAMILY PROTEIN AXL’s LIGAND SELECTIVITY IS REGULATED BY THREE CHARGED AMINO ACIDS
Karakulak T., Batur T., Rodrigues J. P., Öztürk M., KARACA EREK E.
ISMB/ECCB 2019, Basel, İsviçre, 21 - 25 Temmuz 2019, (Özet Bildiri)
2018
20185. Towards characterizing the factors tuning the specificity of biomolecular complexes
KARACA EREK E.
6th International BAU Drug Design Congress, İstanbul, Türkiye, 13 - 15 Aralık 2018, (Özet Bildiri)
2018
20186. Molecular specificity of TAM family receptorstowards different ligands
Karakulak T., KARACA EREK E.
11th International Symposium onHealth Informatics and Bioinformatics, Antalya, Türkiye, 25 - 27 Ekim 2018, (Özet Bildiri)
2018
20187. A Structural Insight into DNA Methylation
Doğan D., KARACA EREK E.
11th International Symposium onHealth Informatics and Bioinformatics, Antalya, Türkiye, 25 - 27 Ekim 2018, (Özet Bildiri)
2018
20188. Investigating Sequence Specificity in Mammalian De novo DNA Methyltransferases through Structural Insight
Doğan D., KARACA EREK E.
6thInternational Congress of theMolecular Biology Associationof Turkey, İzmir, Türkiye, 5 - 08 Eylül 2018, (Özet Bildiri)
2018
20189. Analysis of Mitotic Functions of Mastl Kinase
erguven m., Karakulak T., KARACA EREK E., Diril M. K.
6thInternational Congress of theMolecular Biology Associationof Turkey, İzmir, Türkiye, 5 - 08 Eylül 2018, (Özet Bildiri)
2018
201810. Integrative Modeling of Biomolecular Interactions
KARACA EREK E.
6thInternational Congress of theMolecular Biology Associationof Turkey, İzmir, Türkiye, 5 - 08 Eylül 2018, (Özet Bildiri)
2017
201711. Structure Determination of Molecular Machines
KARACA EREK E.
Workshop in Applied Structural Bioinformatics, Bergen, Norveç, 16 - 20 Ekim 2017, (Özet Bildiri)
2017
201712. Regulation of c-Met signaling by Neddylation in HCC cells
Yılmaz Y., güloglu b., Topel H., KARACA EREK E., ATABEY S. N.
42.FEBS Cogress fom molecules to cell and back, 7 - 10 Eylül 2017, cilt.284, ss.262, (Özet Bildiri)
2017
201713. Upgrading HADDOCK for the Structure Calculation of Molecular Machines
KARACA EREK E.
Haddock Developer’s Meeting, Utrecht, Hollanda, 22 - 23 Ağustos 2017, (Özet Bildiri)
2017
201714. An Integrative Framework for Structure Determination of Molecular Machines
KARACA EREK E., Rodrigues J. P., Andrea G., Bonvin A. M., Carlomagno T.
10th International Symposium on Health Informatics and Bioinformatics, Girne, Kıbrıs (Kktc), 28 - 30 Haziran 2017, (Özet Bildiri)
Kitaplar
2022
20221. Protein Etkileşimlerinin Deneysel ve Hesaplamalı Yaklaşımlarla Bütüncül Olarak Modellenmesi
ACUNER S. E., İmat N. B., İlter M., Şamiloğlu E., KARACA EREK E., ŞENSOY Ö.
PROTEİN: Yapısı, mühendisliği, etkileşimleri, dinamiği ve ilaç tasarımındaki yeri, Dr. Öğretim Üyesi Saliha Ece ACUNER, Editör, Ankara Nobel Tıp Kitabevleri, Ankara, ss.223-237, 2022
2018
20182. Peptide derivatives of erythropoietin in the treatment of neuroinflammation and neurodegeneration
ERCAN İ., TÜFEKCİ K. U., KARACA EREK E., GENÇ Ş., GENÇ K. K.
Therapeutic Proteins and Peptides (Advances in protein chemistry and structural biology, Volume 112), ROSSEN DONEV, Editör, Academic Press , ss.309-357, 2018
Desteklenen Projeler
2023 - 2025
2023 - 2025Kabuki Sendromu ilişkili KMT2D geninin FYR modülünde meydana gelen mutasyonların protein etkileşimlerine ve kromatin organizasyonuna olan etkisinin araştırılması
TÜSEB B Grubu AR-GE Projesi
Erkek Özhan S. (Yürütücü), Oktay Y., Karaca Erek E., Karakülah G., Hız A. S., Ozden Yilmaz G., et al.
Kongre ve Sempozyum Katılımı Faaliyetleri
14 Şubat 2024 - 16 Şubat 2024
14 Şubat 2024 - 16 Şubat 20248th CAPRI evaluation meeting
Davetli Konuşmacı
Grenoble-Fransa
05 Eylül 2023 - 08 Eylül 2023
05 Eylül 2023 - 08 Eylül 2023EMBO Lecture Course: Structural Biophysics of Biomolecular Complexes
Davetli Konuşmacı
İstanbul-Türkiye
01 Temmuz 2023 - 11 Temmuz 2023
01 Temmuz 2023 - 11 Temmuz 2023Tübitak Türkiye-Fransa İkili İşbirliği Programı Çerçevesinde Araştırma Ziyareti
Davetli Konuşmacı
Paris-Fransa
23 Mayıs 2023 - 26 Mayıs 2023
23 Mayıs 2023 - 26 Mayıs 2023EMBO YIN Annual Meeting
Katılımcı
Milan-İtalya
12 Nisan 2023 - 14 Nisan 2023
12 Nisan 2023 - 14 Nisan 2023HUMBOLDT KOLLEG
Davetli Konuşmacı
Ankara-Türkiye
10 Kasım 2022 - 13 Kasım 2022
10 Kasım 2022 - 13 Kasım 2022EMBO Practical Integrative Structural Biology Workshop
Davetli Konuşmacı
Hamburg-Almanya
13 Ekim 2022 - 16 Ekim 2022
13 Ekim 2022 - 16 Ekim 2022CASP Hakem Toplantısına Katılım
Davetli Konuşmacı
Basel-İsviçre
25 Eylül 2022 - 01 Ekim 2022
25 Eylül 2022 - 01 Ekim 2022EMBO YIP Retreat 2022
Katılımcı
Berlin-Almanya
30 Ağustos 2022 - 02 Eylül 2022
30 Ağustos 2022 - 02 Eylül 2022Embo Yapısal Biyoloji Toplantısına Katılım
Davetli Konuşmacı
Krakow-Polonya
21 Haziran 2022 - 21 Haziran 2022
21 Haziran 2022 - 21 Haziran 2022EMBL EBI Webinar: Impact of AlphaFold on teaching and training in life sciences
Panelist
Cambridge-İngiltere
13 Haziran 2022 - 17 Eylül 2022
13 Haziran 2022 - 17 Eylül 2022EMBO Laboratory Leadership for Group Leaders
Katılımcı
Heidelberg-Almanya
22 Mayıs 2022 - 11 Haziran 2022
22 Mayıs 2022 - 11 Haziran 2022TU Berlin'e araştırma ziyareti (Prof. Juri Rappsilber's Lab)
Davetli Konuşmacı
Berlin-Almanya
21 Mart 2022 - 08 Nisan 2022
21 Mart 2022 - 08 Nisan 2022Tübitak Türkiye-Kolombiya İkili İşbirliği Programı Çerçevesinde Araştırma Ziyareti
Davetli Konuşmacı
Medellin-Kolombiya
01 Mart 2022 - 01 Mart 2022
01 Mart 2022 - 01 Mart 2022Ufuk Avrupa Genel Bilgi Günü Etkinliğine Katılım
İzleyici / Dinleyici
İzmir-Türkiye
Atıflar
Toplam Atıf Sayısı (WOS): 3464
h-indeksi (WOS): 22
Jüri Üyelikleri
Ocak-2024
Ocak 2024