A novel trinuclear copper(II) complex bearing mono- and dianionic 5-fluorouracil ligands: Synthesis, crystal structure, Hirshfeld surface analysis, and in silico assessment of thymidylate synthase inhibition


İÇSEL YILMAZ C., Ercan S., AYGÜN M., YILMAZ V. T.

JOURNAL OF MOLECULAR STRUCTURE, cilt.1353, 2026 (SCI-Expanded, Scopus) identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 1353
  • Basım Tarihi: 2026
  • Doi Numarası: 10.1016/j.molstruc.2025.144803
  • Dergi Adı: JOURNAL OF MOLECULAR STRUCTURE
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus, Chemical Abstracts Core, Chimica, Compendex, INSPEC
  • Anahtar Kelimeler: Cu(II) 5-fluorouracil complex, 2 ' -bipyridine, Molecular docking, Thymidylate synthase inhibition, Molecular dynamics simulation
  • Dokuz Eylül Üniversitesi Adresli: Evet

Özet

A novel Cu(II) complex, namely [Cu3(H2O)(bpy)3Cl(5FU)2(mu 3-5FU)(mu 2-OH)]& sdot;H2O & sdot;2EtOH, was synthesized and characterized using FTIR, TG/DTA and single crystal X-ray crystallography. The trinuclear Cu(II) complex is the first example containing both mono-and dianionic 5-fluorourasilate (5-FU) ligands. It consisted of neutral discrete molecules, in which three Cu(II) centres were bridged by a dianionic 5-FU ligand in a mu 3 fashion. Additionally, each Cu(II) centre was coordinated by a bidentate 2,2 '-bipyridine (bpy) ligand, and two of the Cu (II) ions were coordinated by a monodentate 5-FU ligands. Furthermore, the hydroxo ligand also acted as a bridging ligand between two copper centres. The three Cu(II) ions were five-coordinated with a distorted square-pyramidal geometry. Hirshfeld surface analysis was used to investigate non-covalent interactions. In silico studies of the Cu(II) complex against human thymidylate synthase (TS) as a cancer target protein were performed using molecular docking and molecular dynamics (MD) simulation methods. The free binding affinity of the complex toward TS was significantly higher than those of 5-fluorodeoxyuridine monophosphate (FdUMP), indicating the anticancer potential of the complex. Additionally, MD studies confirmed that the TS-Cu(II) complex was stable for a period of 100 ns.